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1.
Sci Rep ; 11(1): 23905, 2021 12 13.
Artigo em Inglês | MEDLINE | ID: mdl-34903773

RESUMO

To develop a fully automatic model capable of reliably quantifying epicardial adipose tissue (EAT) volumes and attenuation in large scale population studies to investigate their relation to markers of cardiometabolic risk. Non-contrast cardiac CT images from the SCAPIS study were used to train and test a convolutional neural network based model to quantify EAT by: segmenting the pericardium, suppressing noise-induced artifacts in the heart chambers, and, if image sets were incomplete, imputing missing EAT volumes. The model achieved a mean Dice coefficient of 0.90 when tested against expert manual segmentations on 25 image sets. Tested on 1400 image sets, the model successfully segmented 99.4% of the cases. Automatic imputation of missing EAT volumes had an error of less than 3.1% with up to 20% of the slices in image sets missing. The most important predictors of EAT volumes were weight and waist, while EAT attenuation was predicted mainly by EAT volume. A model with excellent performance, capable of fully automatic handling of the most common challenges in large scale EAT quantification has been developed. In studies of the importance of EAT in disease development, the strong co-variation with anthropometric measures needs to be carefully considered.


Assuntos
Tecido Adiposo/diagnóstico por imagem , Interpretação de Imagem Assistida por Computador/métodos , Aprendizado de Máquina , Pericárdio/diagnóstico por imagem , Feminino , Humanos , Interpretação de Imagem Assistida por Computador/normas , Masculino , Programas de Rastreamento/métodos , Pessoa de Meia-Idade , Software/normas
2.
Sci Rep ; 11(1): 23912, 2021 12 13.
Artigo em Inglês | MEDLINE | ID: mdl-34903781

RESUMO

Histological stratification in metastatic non-small cell lung cancer (NSCLC) is essential to properly guide therapy. Morphological evaluation remains the basis for subtyping and is completed by additional immunohistochemistry labelling to confirm the diagnosis, which delays molecular analysis and utilises precious sample. Therefore, we tested the capacity of convolutional neural networks (CNNs) to classify NSCLC based on pathologic HES diagnostic biopsies. The model was estimated with a learning cohort of 132 NSCLC patients and validated on an external validation cohort of 65 NSCLC patients. Based on image patches, a CNN using InceptionV3 architecture was trained and optimized to classify NSCLC between squamous and non-squamous subtypes. Accuracies of 0.99, 0.87, 0.85, 0.85 was reached in the training, validation and test sets and in the external validation cohort. At the patient level, the CNN model showed a capacity to predict the tumour histology with accuracy of 0.73 and 0.78 in the learning and external validation cohorts respectively. Selecting tumour area using virtual tissue micro-array improved prediction, with accuracy of 0.82 in the external validation cohort. This study underlines the capacity of CNN to predict NSCLC subtype with good accuracy and to be applied to small pathologic samples without annotation.


Assuntos
Carcinoma Pulmonar de Células não Pequenas/patologia , Carcinoma de Células Escamosas/patologia , Interpretação de Imagem Assistida por Computador/métodos , Aprendizado de Máquina/normas , Carcinoma Pulmonar de Células não Pequenas/classificação , Carcinoma de Células Escamosas/classificação , Humanos , Interpretação de Imagem Assistida por Computador/normas , Imuno-Histoquímica/métodos , Sensibilidade e Especificidade , Software/normas
3.
JAMA Netw Open ; 4(11): e2132554, 2021 11 01.
Artigo em Inglês | MEDLINE | ID: mdl-34730818

RESUMO

Importance: The Gleason grading system has been the most reliable tool for the prognosis of prostate cancer since its development. However, its clinical application remains limited by interobserver variability in grading and quantification, which has negative consequences for risk assessment and clinical management of prostate cancer. Objective: To examine the impact of an artificial intelligence (AI)-assisted approach to prostate cancer grading and quantification. Design, Setting, and Participants: This diagnostic study was conducted at the University of Wisconsin-Madison from August 2, 2017, to December 30, 2019. The study chronologically selected 589 men with biopsy-confirmed prostate cancer who received care in the University of Wisconsin Health System between January 1, 2005, and February 28, 2017. A total of 1000 biopsy slides (1 or 2 slides per patient) were selected and scanned to create digital whole-slide images, which were used to develop and validate a deep convolutional neural network-based AI-powered platform. The whole-slide images were divided into a training set (n = 838) and validation set (n = 162). Three experienced academic urological pathologists (W.H., K.A.I., and R.H., hereinafter referred to as pathologists 1, 2, and 3, respectively) were involved in the validation. Data were collected between December 29, 2018, and December 20, 2019, and analyzed from January 4, 2020, to March 1, 2021. Main Outcomes and Measures: Accuracy of prostate cancer detection by the AI-powered platform and comparison of prostate cancer grading and quantification performed by the 3 pathologists using manual vs AI-assisted methods. Results: Among 589 men with biopsy slides, the mean (SD) age was 63.8 (8.2) years, the mean (SD) prebiopsy prostate-specific antigen level was 10.2 (16.2) ng/mL, and the mean (SD) total cancer volume was 15.4% (20.1%). The AI system was able to distinguish prostate cancer from benign prostatic epithelium and stroma with high accuracy at the patch-pixel level, with an area under the receiver operating characteristic curve of 0.92 (95% CI, 0.88-0.95). The AI system achieved almost perfect agreement with the training pathologist (pathologist 1) in detecting prostate cancer at the patch-pixel level (weighted κ = 0.97; asymptotic 95% CI, 0.96-0.98) and in grading prostate cancer at the slide level (weighted κ = 0.98; asymptotic 95% CI, 0.96-1.00). Use of the AI-assisted method was associated with significant improvements in the concordance of prostate cancer grading and quantification between the 3 pathologists (eg, pathologists 1 and 2: 90.1% agreement using AI-assisted method vs 84.0% agreement using manual method; P < .001) and significantly higher weighted κ values for all pathologists (eg, pathologists 2 and 3: weighted κ = 0.92 [asymptotic 95% CI, 0.90-0.94] for AI-assisted method vs 0.76 [asymptotic 95% CI, 0.71-0.80] for manual method; P < .001) compared with the manual method. Conclusions and Relevance: In this diagnostic study, an AI-powered platform was able to detect, grade, and quantify prostate cancer with high accuracy and efficiency and was associated with significant reductions in interobserver variability. These results suggest that an AI-powered platform could potentially transform histopathological evaluation and improve risk stratification and clinical management of prostate cancer.


Assuntos
Interpretação de Imagem Assistida por Computador/métodos , Gradação de Tumores/métodos , Neoplasias da Próstata/patologia , Idoso , Idoso de 80 Anos ou mais , Algoritmos , Inteligência Artificial , Humanos , Interpretação de Imagem Assistida por Computador/normas , Masculino , Pessoa de Meia-Idade , Redes Neurais de Computação , Variações Dependentes do Observador , Reprodutibilidade dos Testes , Wisconsin
4.
Radiol Clin North Am ; 59(6): 1063-1074, 2021 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-34689874

RESUMO

Although recent scientific studies suggest that artificial intelligence (AI) could provide value in many radiology applications, much of the hard engineering work required to consistently realize this value in practice remains to be done. In this article, we summarize the various ways in which AI can benefit radiology practice, identify key challenges that must be overcome for those benefits to be delivered, and discuss promising avenues by which these challenges can be addressed.


Assuntos
Inteligência Artificial/normas , Diagnóstico por Imagem/métodos , Interpretação de Imagem Assistida por Computador/métodos , Radiologia/métodos , Radiologia/normas , Diagnóstico por Imagem/normas , Humanos , Interpretação de Imagem Assistida por Computador/normas , Reprodutibilidade dos Testes , Software
5.
Radiol Clin North Am ; 59(6): 1075-1083, 2021 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-34689875

RESUMO

Artificial intelligence technology promises to redefine the practice of radiology. However, it exists in a nascent phase and remains largely untested in the clinical space. This nature is both a cause and consequence of the uncertain legal-regulatory environment it enters. This discussion aims to shed light on these challenges, tracing the various pathways toward approval by the US Food and Drug Administration, the future of government oversight, privacy issues, ethical dilemmas, and practical considerations related to implementation in radiologist practice.


Assuntos
Inteligência Artificial/legislação & jurisprudência , Diagnóstico por Imagem/métodos , Interpretação de Imagem Assistida por Computador/métodos , Radiologia/legislação & jurisprudência , Diagnóstico por Imagem/normas , Humanos , Interpretação de Imagem Assistida por Computador/normas , Estados Unidos , United States Food and Drug Administration
6.
Sci Rep ; 11(1): 18130, 2021 09 13.
Artigo em Inglês | MEDLINE | ID: mdl-34518578

RESUMO

Psoriasis is a chronic inflammatory skin disease that occurs in various forms throughout the body and is associated with certain conditions such as heart disease, diabetes, and depression. The psoriasis area severity index (PASI) score, a tool used to evaluate the severity of psoriasis, is currently used in clinical trials and clinical research. The determination of severity is based on the subjective judgment of the clinician. Thus, the disease evaluation deviations are induced. Therefore, we propose optimal algorithms that can effectively segment the lesion area and classify the severity. In addition, a new dataset on psoriasis was built, including patch images of erythema and scaling. We performed psoriasis lesion segmentation and classified the disease severity. In addition, we evaluated the best-performing segmentation method and classifier and analyzed features that are highly related to the severity of psoriasis. In conclusion, we presented the optimal techniques for evaluating the severity of psoriasis. Our newly constructed dataset improved the generalization performance of psoriasis diagnosis and evaluation. It proposed an optimal system for specific evaluation indicators of the disease and a quantitative PASI scoring method. The proposed system can help to evaluate the severity of localized psoriasis more accurately.


Assuntos
Interpretação de Imagem Assistida por Computador/métodos , Psoríase/diagnóstico , Pele/diagnóstico por imagem , Pele/patologia , Área Sob a Curva , Tomada de Decisão Clínica , Gerenciamento Clínico , Eritema/patologia , Humanos , Interpretação de Imagem Assistida por Computador/normas , Processamento de Imagem Assistida por Computador , Psoríase/etiologia , Índice de Gravidade de Doença
7.
PLoS One ; 16(7): e0253653, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34197503

RESUMO

PURPOSE: To facilitate the demonstration of the prognostic value of radiomics, multicenter radiomics studies are needed. Pooling radiomic features of such data in a statistical analysis is however challenging, as they are sensitive to the variability in scanner models, acquisition protocols and reconstruction settings, which is often unavoidable in a multicentre retrospective analysis. A statistical harmonization strategy called ComBat was utilized in radiomics studies to deal with the "center-effect". The goal of the present work was to integrate a transfer learning (TL) technique within ComBat-and recently developed alternate versions of ComBat with improved flexibility (M-ComBat) and robustness (B-ComBat)-to allow the use of a previously determined harmonization transform to the radiomic feature values of new patients from an already known center. MATERIAL AND METHODS: The proposed TL approach were incorporated in the four versions of ComBat (standard, B, M, and B-M ComBat). The proposed approach was evaluated using a dataset of 189 locally advanced cervical cancer patients from 3 centers, with magnetic resonance imaging (MRI) and positron emission tomography (PET) images, with the clinical endpoint of predicting local failure. The impact performance of the TL approach was evaluated by comparing the harmonization achieved using only parts of the data to the reference (harmonization achieved using all the available data). It was performed through three different machine learning pipelines. RESULTS: The proposed TL technique was successful in harmonizing features of new patients from a known center in all versions of ComBat, leading to predictive models reaching similar performance as the ones developed using the features harmonized with all the data available. CONCLUSION: The proposed TL approach enables applying a previously determined ComBat transform to new, previously unseen data.


Assuntos
Colo do Útero/diagnóstico por imagem , Interpretação de Imagem Assistida por Computador/normas , Aprendizado de Máquina/normas , Neoplasias do Colo do Útero/diagnóstico , Adulto , Idoso , Idoso de 80 Anos ou mais , Colo do Útero/patologia , Quimiorradioterapia/métodos , Conjuntos de Dados como Assunto , Sistemas de Apoio a Decisões Clínicas/normas , Sistemas de Apoio a Decisões Clínicas/estatística & dados numéricos , Feminino , Seguimentos , Humanos , Interpretação de Imagem Assistida por Computador/métodos , Interpretação de Imagem Assistida por Computador/estatística & dados numéricos , Aprendizado de Máquina/estatística & dados numéricos , Imageamento por Ressonância Magnética/normas , Imageamento por Ressonância Magnética/estatística & dados numéricos , Pessoa de Meia-Idade , Tomografia por Emissão de Pósitrons/normas , Tomografia por Emissão de Pósitrons/estatística & dados numéricos , Estudos Retrospectivos , Tomografia Computadorizada por Raios X/normas , Tomografia Computadorizada por Raios X/estatística & dados numéricos , Resultado do Tratamento , Neoplasias do Colo do Útero/terapia , Adulto Jovem
8.
PLoS One ; 16(6): e0253117, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34181667

RESUMO

The substantial improvement in the efficiency of switching filters, intended for the removal of impulsive noise within color images is described. Numerous noisy pixel detection and replacement techniques are evaluated, where the filtering performance for color images and subsequent results are assessed using statistical reasoning. Denoising efficiency for the applied detection and interpolation techniques are assessed when the location of corrupted pixels are identified by noisy pixel detection algorithms and also in the scenario when they are already known. The results show that improvement in objective quality measures can be achieved by using more robust detection techniques, combined with novel methods of corrupted pixel restoration. A significant increase in the image denoising performance is achieved for both pixel detection and interpolation, surpassing current filtering methods especially via the application of a convolutional network. The interpolation techniques used in the image inpainting methods also significantly increased the efficiency of impulsive noise removal.


Assuntos
Algoritmos , Aumento da Imagem/normas , Interpretação de Imagem Assistida por Computador/normas , Processamento de Sinais Assistido por Computador/instrumentação , Razão Sinal-Ruído , Humanos
9.
J Neuropathol Exp Neurol ; 80(7): 685-694, 2021 08 11.
Artigo em Inglês | MEDLINE | ID: mdl-34041546

RESUMO

Intraepidermal nerve fiber density (IENFD) measurements in skin biopsy are performed manually by 1-3 operators. To improve diagnostic accuracy and applicability in clinical practice, we developed an automated method for fast IENFD determination with low operator-dependency. Sixty skin biopsy specimens were stained with the axonal marker PGP9.5 and imaged using a widefield fluorescence microscope. IENFD was first determined manually by 3 independent observers. Subsequently, images were processed in their Z-max projection and the intradermal line was delineated automatically. IENFD was calculated automatically (fluorescent images automated counting [FIAC]) and compared with manual counting on the same fluorescence images (fluorescent images manual counting [FIMC]), and with classical manual counting (CMC) data. A FIMC showed lower variability among observers compared with CMC (interclass correlation [ICC] = 0.996 vs 0.950). FIMC and FIAC showed high reliability (ICC = 0.999). A moderate-to-high (ICC = 0.705) was observed between CMC and FIAC counting. The algorithm process took on average 15 seconds to perform FIAC counting, compared with 10 minutes for FIMC counting. This automated method rapidly and reliably detects small nerve fibers in skin biopsies with clear advantages over the classical manual technique.


Assuntos
Axônios/patologia , Epiderme/patologia , Interpretação de Imagem Assistida por Computador/métodos , Algoritmos , Axônios/metabolismo , Biópsia/métodos , Epiderme/inervação , Humanos , Interpretação de Imagem Assistida por Computador/normas , Microscopia de Fluorescência/métodos , Ubiquitina Tiolesterase/metabolismo
10.
JAMA Netw Open ; 4(5): e2111176, 2021 05 03.
Artigo em Inglês | MEDLINE | ID: mdl-34028548

RESUMO

Importance: Interstitial fibrosis and tubular atrophy (IFTA) is a strong indicator of decline in kidney function and is measured using histopathological assessment of kidney biopsy core. At present, a noninvasive test to assess IFTA is not available. Objective: To develop and validate a deep learning (DL) algorithm to quantify IFTA from kidney ultrasonography images. Design, Setting, and Participants: This was a single-center diagnostic study of consecutive patients who underwent native kidney biopsy at John H. Stroger Jr. Hospital of Cook County, Chicago, Illinois, between January 1, 2014, and December 31, 2018. A DL algorithm was trained, validated, and tested to classify IFTA from kidney ultrasonography images. Of 6135 Crimmins-filtered ultrasonography images, 5523 were used for training (5122 images) and validation (401 images), and 612 were used to test the accuracy of the DL system. Kidney segmentation was performed using the UNet architecture, and classification was performed using a convolution neural network-based feature extractor and extreme gradient boosting. IFTA scored by a nephropathologist on trichrome stained kidney biopsy slide was used as the reference standard. IFTA was divided into 4 grades (grade 1, 0%-24%; grade 2, 25%-49%; grade 3, 50%-74%; and grade 4, 75%-100%). Data analysis was performed from December 2019 to May 2020. Main Outcomes and Measures: Prediction of IFTA grade was measured using the metrics precision, recall, accuracy, and F1 score. Results: This study included 352 patients (mean [SD] age 47.43 [14.37] years), of whom 193 (54.82%) were women. There were 159 patients with IFTA grade 1 (2701 ultrasonography images), 74 patients with IFTA grade 2 (1239 ultrasonography images), 41 patients with IFTA grade 3 (701 ultrasonography images), and 78 patients with IFTA grade 4 (1494 ultrasonography images). Kidney ultrasonography images were segmented with 91% accuracy. In the independent test set, the point estimates for performance matrices showed precision of 0.8927 (95% CI, 0.8682-0.9172), recall of 0.8037 (95% CI, 0.7722-0.8352), accuracy of 0.8675 (95% CI, 0.8406-0.8944), and an F1 score of 0.8389 (95% CI, 0.8098-0.8680) at the image level. Corresponding estimates at the patient level were precision of 0.9003 (95% CI, 0.8644-0.9362), recall of 0.8421 (95% CI, 0.7984-0.8858), accuracy of 0.8955 (95% CI, 0.8589-0.9321), and an F1 score of 0.8639 (95% CI, 0.8228-0.9049). Accuracy at the patient level was highest for IFTA grade 1 and IFTA grade 4. The accuracy (approximately 90%) remained high irrespective of the timing of ultrasonography studies and the biopsy diagnosis. The predictive performance of the DL system did not show significant improvement when combined with baseline clinical characteristics. Conclusions and Relevance: These findings suggest that a DL algorithm can accurately and independently predict IFTA from kidney ultrasonography images.


Assuntos
Algoritmos , Biópsia/normas , Aprendizado Profundo , Fibrose/diagnóstico por imagem , Interpretação de Imagem Assistida por Computador/normas , Nefropatias/diagnóstico por imagem , Ultrassonografia/normas , Adulto , Chicago , Feminino , Fibrose/fisiopatologia , Humanos , Nefropatias/complicações , Nefropatias/fisiopatologia , Masculino , Pessoa de Meia-Idade , Guias de Prática Clínica como Assunto/normas
11.
Philos Trans A Math Phys Eng Sci ; 379(2200): 20200203, 2021 Jun 28.
Artigo em Inglês | MEDLINE | ID: mdl-33966462

RESUMO

Fast magnetic resonance imaging (MRI) is crucial for clinical applications that can alleviate motion artefacts and increase patient throughput. K-space undersampling is an obvious approach to accelerate MR acquisition. However, undersampling of k-space data can result in blurring and aliasing artefacts for the reconstructed images. Recently, several studies have been proposed to use deep learning-based data-driven models for MRI reconstruction and have obtained promising results. However, the comparison of these methods remains limited because the models have not been trained on the same datasets and the validation strategies may be different. The purpose of this work is to conduct a comparative study to investigate the generative adversarial network (GAN)-based models for MRI reconstruction. We reimplemented and benchmarked four widely used GAN-based architectures including DAGAN, ReconGAN, RefineGAN and KIGAN. These four frameworks were trained and tested on brain, knee and liver MRI images using twofold, fourfold and sixfold accelerations, respectively, with a random undersampling mask. Both quantitative evaluations and qualitative visualization have shown that the RefineGAN method has achieved superior performance in reconstruction with better accuracy and perceptual quality compared to other GAN-based methods. This article is part of the theme issue 'Synergistic tomographic image reconstruction: part 1'.


Assuntos
Aprendizado Profundo , Interpretação de Imagem Assistida por Computador/métodos , Imageamento por Ressonância Magnética/métodos , Redes Neurais de Computação , Algoritmos , Benchmarking , Encéfalo/diagnóstico por imagem , Compressão de Dados , Bases de Dados Factuais/estatística & dados numéricos , Humanos , Interpretação de Imagem Assistida por Computador/normas , Interpretação de Imagem Assistida por Computador/estatística & dados numéricos , Joelho/diagnóstico por imagem , Funções Verossimilhança , Modelos Lineares , Fígado/diagnóstico por imagem , Imageamento por Ressonância Magnética/normas , Imageamento por Ressonância Magnética/estatística & dados numéricos
12.
Hum Brain Mapp ; 42(9): 2862-2879, 2021 06 15.
Artigo em Inglês | MEDLINE | ID: mdl-33738898

RESUMO

Deep brain stimulation (DBS) surgery has been shown to dramatically improve the quality of life for patients with various motor dysfunctions, such as those afflicted with Parkinson's disease (PD), dystonia, and essential tremor (ET), by relieving motor symptoms associated with such pathologies. The success of DBS procedures is directly related to the proper placement of the electrodes, which requires the ability to accurately detect and identify relevant target structures within the subcortical basal ganglia region. In particular, accurate and reliable segmentation of the globus pallidus (GP) interna is of great interest for DBS surgery for PD and dystonia. In this study, we present a deep-learning based neural network, which we term GP-net, for the automatic segmentation of both the external and internal segments of the globus pallidus. High resolution 7 Tesla images from 101 subjects were used in this study; GP-net is trained on a cohort of 58 subjects, containing patients with movement disorders as well as healthy control subjects. GP-net performs 3D inference in a patient-specific manner, alleviating the need for atlas-based segmentation. GP-net was extensively validated, both quantitatively and qualitatively over 43 test subjects including patients with movement disorders and healthy control and is shown to consistently produce improved segmentation results compared with state-of-the-art atlas-based segmentations. We also demonstrate a postoperative lead location assessment with respect to a segmented globus pallidus obtained by GP-net.


Assuntos
Aprendizado Profundo , Globo Pálido/anatomia & histologia , Globo Pálido/diagnóstico por imagem , Interpretação de Imagem Assistida por Computador , Imageamento por Ressonância Magnética , Transtornos dos Movimentos/diagnóstico por imagem , Adulto , Idoso , Idoso de 80 Anos ou mais , Feminino , Humanos , Interpretação de Imagem Assistida por Computador/métodos , Interpretação de Imagem Assistida por Computador/normas , Imageamento por Ressonância Magnética/métodos , Imageamento por Ressonância Magnética/normas , Masculino , Pessoa de Meia-Idade , Transtornos dos Movimentos/patologia , Reprodutibilidade dos Testes , Adulto Jovem
13.
Parkinsonism Relat Disord ; 85: 84-90, 2021 04.
Artigo em Inglês | MEDLINE | ID: mdl-33761389

RESUMO

OBJECTIVES: Despite its use in determining nigrostriatal degeneration, the lack of a consistent interpretation of nigrosome 1 susceptibility map-weighted imaging (SMwI) limits its generalized applicability. To implement and evaluate a diagnostic algorithm based on convolutional neural networks for interpreting nigrosome 1 SMwI for determining nigrostriatal degeneration in idiopathic Parkinson's disease (IPD). METHODS: In this retrospective study, we enrolled 267 IPD patients and 160 control subjects (125 patients with drug-induced parkinsonism and 35 healthy subjects) at our institute, and 24 IPD patients and 27 control subjects at three other institutes on approval of the local institutional review boards. Dopamine transporter imaging served as the reference standard for the presence or absence of abnormalities of nigrosome 1 on SMwI. Diagnostic performance was compared between visual assessment by an experienced neuroradiologist and the developed deep learning-based diagnostic algorithm in both internal and external datasets using a bootstrapping method with 10000 re-samples by the "pROC" package of R (version 1.16.2). RESULTS: The area under the receiver operating characteristics curve (AUC) (95% confidence interval [CI]) per participant by the bootstrap method was not significantly different between visual assessment and the deep learning-based algorithm (internal validation, .9622 [0.8912-1.0000] versus 0.9534 [0.8779-0.9956], P = .1511; external validation, 0.9367 [0.8843-0.9802] versus 0.9208 [0.8634-0.9693], P = .6267), indicative of a comparable performance to visual assessment. CONCLUSIONS: Our deep learning-based algorithm for assessing abnormalities of nigrosome 1 on SMwI was found to have a comparable performance to that of an experienced neuroradiologist.


Assuntos
Aprendizado Profundo , Interpretação de Imagem Assistida por Computador , Imageamento por Ressonância Magnética , Doença de Parkinson Secundária/diagnóstico por imagem , Doença de Parkinson/diagnóstico por imagem , Substância Negra/diagnóstico por imagem , Idoso , Proteínas da Membrana Plasmática de Transporte de Dopamina/farmacocinética , Feminino , Humanos , Interpretação de Imagem Assistida por Computador/métodos , Interpretação de Imagem Assistida por Computador/normas , Imageamento por Ressonância Magnética/métodos , Imageamento por Ressonância Magnética/normas , Masculino , Pessoa de Meia-Idade , Doença de Parkinson Secundária/induzido quimicamente , Tomografia por Emissão de Pósitrons , Reprodutibilidade dos Testes , Estudos Retrospectivos , Tropanos
14.
Hum Brain Mapp ; 42(9): 2734-2745, 2021 06 15.
Artigo em Inglês | MEDLINE | ID: mdl-33783933

RESUMO

Volumetric estimates of subcortical and cortical structures, extracted from T1-weighted MRIs, are widely used in many clinical and research applications. Here, we investigate the impact of the presence of white matter hyperintensities (WMHs) on FreeSurfer gray matter (GM) structure volumes and its possible bias on functional relationships. T1-weighted images from 1,077 participants (4,321 timepoints) from the Alzheimer's Disease Neuroimaging Initiative were processed with FreeSurfer version 6.0.0. WMHs were segmented using a previously validated algorithm on either T2-weighted or Fluid-attenuated inversion recovery images. Mixed-effects models were used to assess the relationships between overlapping WMHs and GM structure volumes and overall WMH burden, as well as to investigate whether such overlaps impact associations with age, diagnosis, and cognitive performance. Participants with higher WMH volumes had higher overlaps with GM volumes of bilateral caudate, cerebral cortex, putamen, thalamus, pallidum, and accumbens areas (p < .0001). When not corrected for WMHs, caudate volumes increased with age (p < .0001) and were not different between cognitively healthy individuals and age-matched probable Alzheimer's disease patients. After correcting for WMHs, caudate volumes decreased with age (p < .0001), and Alzheimer's disease patients had lower caudate volumes than cognitively healthy individuals (p < .01). Uncorrected caudate volume was not associated with ADAS13 scores, whereas corrected lower caudate volumes were significantly associated with poorer cognitive performance (p < .0001). Presence of WMHs leads to systematic inaccuracies in GM segmentations, particularly for the caudate, which can also change clinical associations. While specifically measured for the Freesurfer toolkit, this problem likely affects other algorithms.


Assuntos
Doença de Alzheimer , Substância Cinzenta , Interpretação de Imagem Assistida por Computador/normas , Leucoaraiose , Imageamento por Ressonância Magnética/normas , Neuroimagem/normas , Idoso , Doença de Alzheimer/diagnóstico por imagem , Doença de Alzheimer/patologia , Substância Cinzenta/diagnóstico por imagem , Substância Cinzenta/patologia , Humanos , Interpretação de Imagem Assistida por Computador/métodos , Leucoaraiose/diagnóstico por imagem , Leucoaraiose/patologia , Estudos Longitudinais , Imageamento por Ressonância Magnética/métodos , Neuroimagem/métodos
15.
Commun Biol ; 4(1): 170, 2021 02 05.
Artigo em Inglês | MEDLINE | ID: mdl-33547415

RESUMO

Machine learning has greatly facilitated the analysis of medical data, while the internal operations usually remain intransparent. To better comprehend these opaque procedures, a convolutional neural network for optical coherence tomography image segmentation was enhanced with a Traceable Relevance Explainability (T-REX) technique. The proposed application was based on three components: ground truth generation by multiple graders, calculation of Hamming distances among graders and the machine learning algorithm, as well as a smart data visualization ('neural recording'). An overall average variability of 1.75% between the human graders and the algorithm was found, slightly minor to 2.02% among human graders. The ambiguity in ground truth had noteworthy impact on machine learning results, which could be visualized. The convolutional neural network balanced between graders and allowed for modifiable predictions dependent on the compartment. Using the proposed T-REX setup, machine learning processes could be rendered more transparent and understandable, possibly leading to optimized applications.


Assuntos
Aprendizado Profundo , Aprendizado de Máquina , Tomografia de Coerência Óptica , Adulto , Algoritmos , Animais , Inteligência Artificial , Competência Clínica , Feminino , Humanos , Interpretação de Imagem Assistida por Computador/métodos , Interpretação de Imagem Assistida por Computador/normas , Interpretação de Imagem Assistida por Computador/estatística & dados numéricos , Macaca fascicularis , Masculino , Pessoa de Meia-Idade , Imagem Multimodal/métodos , Imagem Multimodal/tendências , Redes Neurais de Computação , Variações Dependentes do Observador , Reprodutibilidade dos Testes , Retina/diagnóstico por imagem , Retina/patologia , Doenças Retinianas/diagnóstico , Doenças Retinianas/epidemiologia , Estudos Retrospectivos , Tomografia de Coerência Óptica/métodos , Tomografia de Coerência Óptica/estatística & dados numéricos
16.
Indian J Pathol Microbiol ; 64(1): 78-83, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33433413

RESUMO

CONTEXT: Whole slide imaging (WSI) is an important component of digital pathology which includes digitization of glass slides and their storage as digital images. Implementation of WSI for primary surgical pathology diagnosis is evolving, following various studies which have evaluated the feasibility of WSI technology for primary diagnosis. AIMS, SETTINGS AND DESIGN: The present study was a single-center, observational study which included evaluation by three pathologists and aimed at assessing concordance on specialty-specific diagnosis and comparison of time taken for diagnosis on WSI and conventional light microscopy (CLM). MATERIALS AND METHODS: Seventy prostate core biopsy slides (reported between January 2016 and December 2016) were scanned using Pannoramic MIDI II scanner, 3DHISTECH, Budapest, Hungary, at 20× and 40×. Sixty slides were used for validation study following training with 10 slides. STATISTICAL ANALYSIS USED: Intraobserver concordance for diagnosis between the two platforms of evaluation was analyzed using Cohen's κ statistics and intraclass correlation coefficient (ICC); observation time for diagnosis was compared by Wilcoxon signed-rank test. RESULTS: Interpretation on WSI using 20× and 40× was comparable with no major discordance. A high level of intraobserver agreement was observed between CLM and WSI for all three observers, both for primary diagnosis (κ = 0.9) and Grade group (κ = 0.7-0.8) in cases of prostatic adenocarcinoma. The major discordance rate between CLM and WSI was 3.3%-8.3%, which reflected the expertise of the observers. The time spent for diagnosis using WSI was variable for the three pathologists. CONCLUSION: WSI is comparable to CLM and can be safely incorporated for primary histological diagnosis of prostate core biopsies.


Assuntos
Interpretação de Imagem Assistida por Computador/métodos , Interpretação de Imagem Assistida por Computador/normas , Patologia Cirúrgica/métodos , Patologia Cirúrgica/normas , Próstata/patologia , Neoplasias da Próstata/diagnóstico , Adenocarcinoma/diagnóstico , Biópsia com Agulha de Grande Calibre , Humanos , Interpretação de Imagem Assistida por Computador/instrumentação , Masculino , Microscopia/instrumentação , Microscopia/métodos , Microscopia/normas , Variações Dependentes do Observador , Patologistas , Patologia Clínica/métodos , Patologia Cirúrgica/instrumentação
17.
Am J Clin Pathol ; 155(5): 638-648, 2021 04 26.
Artigo em Inglês | MEDLINE | ID: mdl-33511392

RESUMO

OBJECTIVES: The ongoing global severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic necessitates adaptations in the practice of surgical pathology at scale. Primary diagnosis by whole-slide imaging (WSI) is a key component that would aid departments in providing uninterrupted histopathology diagnosis and maintaining revenue streams from disruption. We sought to perform rapid validation of the use of WSI in primary diagnosis meeting recommendations of the College of American Pathologists guidelines. METHODS: Glass slides from clinically reported cases from 5 participating pathologists with a preset washout period were digitally scanned and reviewed in settings identical to typical reporting. Cases were classified as concordant or with minor or major disagreement with the original diagnosis. Randomized subsampling was performed, and mean concordance rates were calculated. RESULTS: In total, 171 cases were included and distributed equally among participants. For the group as a whole, the mean concordance rate in sampled cases (n = 90) was 83.6% counting all discrepancies and 94.6% counting only major disagreements. The mean pathologist concordance rate in sampled cases (n = 18) ranged from 90.49% to 97%. CONCLUSIONS: We describe a novel double-blinded method for rapid validation of WSI for primary diagnosis. Our findings highlight the occurrence of a range of diagnostic reproducibility when deploying digital methods.


Assuntos
Interpretação de Imagem Assistida por Computador/métodos , Patologia Cirúrgica/métodos , Telepatologia/métodos , COVID-19/epidemiologia , COVID-19/prevenção & controle , Método Duplo-Cego , Humanos , Interpretação de Imagem Assistida por Computador/normas , Variações Dependentes do Observador , Pandemias/prevenção & controle , Patologia Cirúrgica/normas , Guias de Prática Clínica como Assunto , Reprodutibilidade dos Testes , Estudos Retrospectivos , Telepatologia/normas
18.
BMC Med Imaging ; 21(1): 9, 2021 01 07.
Artigo em Inglês | MEDLINE | ID: mdl-33413181

RESUMO

BACKGROUND: Deep neural networks (DNNs) are widely investigated in medical image classification to achieve automated support for clinical diagnosis. It is necessary to evaluate the robustness of medical DNN tasks against adversarial attacks, as high-stake decision-making will be made based on the diagnosis. Several previous studies have considered simple adversarial attacks. However, the vulnerability of DNNs to more realistic and higher risk attacks, such as universal adversarial perturbation (UAP), which is a single perturbation that can induce DNN failure in most classification tasks has not been evaluated yet. METHODS: We focus on three representative DNN-based medical image classification tasks (i.e., skin cancer, referable diabetic retinopathy, and pneumonia classifications) and investigate their vulnerability to the seven model architectures of UAPs. RESULTS: We demonstrate that DNNs are vulnerable to both nontargeted UAPs, which cause a task failure resulting in an input being assigned an incorrect class, and to targeted UAPs, which cause the DNN to classify an input into a specific class. The almost imperceptible UAPs achieved > 80% success rates for nontargeted and targeted attacks. The vulnerability to UAPs depended very little on the model architecture. Moreover, we discovered that adversarial retraining, which is known to be an effective method for adversarial defenses, increased DNNs' robustness against UAPs in only very few cases. CONCLUSION: Unlike previous assumptions, the results indicate that DNN-based clinical diagnosis is easier to deceive because of adversarial attacks. Adversaries can cause failed diagnoses at lower costs (e.g., without consideration of data distribution); moreover, they can affect the diagnosis. The effects of adversarial defenses may not be limited. Our findings emphasize that more careful consideration is required in developing DNNs for medical imaging and their practical applications.


Assuntos
Diagnóstico por Imagem/classificação , Interpretação de Imagem Assistida por Computador/métodos , Interpretação de Imagem Assistida por Computador/normas , Redes Neurais de Computação , Retinopatia Diabética/classificação , Retinopatia Diabética/diagnóstico por imagem , Diagnóstico por Imagem/normas , Humanos , Fotografação/classificação , Pneumonia/classificação , Pneumonia/diagnóstico por imagem , Radiografia Torácica/classificação , Neoplasias Cutâneas/classificação , Neoplasias Cutâneas/diagnóstico por imagem , Tomografia de Coerência Óptica/classificação
19.
Int J Neurosci ; 131(6): 555-570, 2021 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-32241208

RESUMO

PURPOSE: The brain tumor grows inside the skull and interposes with regular brain functioning. The tumor growth may possibly result in cancer at a later stage. The early detection of brain tumor is crucial for successful treatment of fatal disease. The tumor presence is normally detected by Computed Tomography (CT) or Magnetic Resonance Imaging (MRI) images. The MRI/CT images are highly complex and involve huge data. This requires highly tedious and time-consuming process for detection of small tumors for the neurologists. Thus, there is a need to develop an effective and less time-consuming imaging technique for early detection of brain tumors. MATERIALS AND METHODS: This paper mainly focuses on early detecting and localizing the brain tumor region using segmentation of patient's MRI images. The Matlab software experiments are performed on a set of fifteen tumorous MRI images. In the proposed work, four image segmentation modalities namely watershed transform, k-means clustering, thresholding and Fuzzy C Means Clustering techniques with median filtering have been implemented. RESULTS: The results are verified by quantitative comparison of results in terms of image quality evaluation parameters-Entropy, standard deviation and Naturalness Image Quality Evaluator. A remarkable rise in the entropy and standard deviation values has been noticed. CONCLUSIONS: The watershed transform segmentation with median filtering yields the best quality brain tumor images. The noteworthy improvement in visibility of the MRI images may highly increase the possibilities of early detection and successful treatment of brain tumor disease and thereby assists the clinicians to decide the precise therapies.


Assuntos
Neoplasias Encefálicas/diagnóstico por imagem , Detecção Precoce de Câncer , Interpretação de Imagem Assistida por Computador/métodos , Processamento de Imagem Assistida por Computador/métodos , Imageamento por Ressonância Magnética/métodos , Neuroimagem/métodos , Humanos , Interpretação de Imagem Assistida por Computador/normas , Processamento de Imagem Assistida por Computador/normas , Imageamento por Ressonância Magnética/normas , Neuroimagem/normas
20.
Methods ; 188: 84-97, 2021 04.
Artigo em Inglês | MEDLINE | ID: mdl-32497604

RESUMO

Lung cancer is the most common cancer, worldwide, and a major health issue with a remarkable mortality rate. 2-[18F]fluoro-2-deoxy-D-glucose positron emission tomography/computed tomography (2-[18F]FDG PET/CT) plays an indispensable role in the management of lung cancer patients. Long-established quantitative parameters such as size, density, and metabolic activity have been and are being employed in the current practice to enhance interpretation and improve diagnostic and prognostic value. The introduction of radiomics analysis revolutionized the quantitative evaluation of medical imaging, revealing data within images beyond visual interpretation. The "big data" are extracted from high-quality images and are converted into information that correlates to relevant genetic, pathologic, clinical, or prognostic features. Technically advanced, diverse methods have been implemented in different studies. The standardization of image acquisition, segmentation and features analysis is still a debated issue. Importantly, a body of features has been extracted and employed for diagnosis, staging, risk stratification, prognostication, and therapeutic response. 2-[18F]FDG PET/CT-derived features show promising value in non-invasively diagnosing the malignant nature of pulmonary nodules, differentiating lung cancer subtypes, and predicting response to different therapies as well as survival. In this review article, we aimed to provide an overview of the technical aspects used in radiomics analysis in non-small cell lung cancer (NSCLC) and elucidate the role of 2-[18F]FDG PET/CT-derived radiomics in the diagnosis, prognostication, and therapeutic response.


Assuntos
Interpretação de Imagem Assistida por Computador/normas , Neoplasias Pulmonares/diagnóstico , Pulmão/diagnóstico por imagem , Tomografia por Emissão de Pósitrons combinada à Tomografia Computadorizada/normas , Radiologia/normas , Fluordesoxiglucose F18/administração & dosagem , Humanos , Pulmão/patologia , Neoplasias Pulmonares/mortalidade , Neoplasias Pulmonares/patologia , Neoplasias Pulmonares/terapia , Metástase Linfática/diagnóstico , Tomografia por Emissão de Pósitrons combinada à Tomografia Computadorizada/métodos , Guias de Prática Clínica como Assunto , Prognóstico , Intervalo Livre de Progressão , Radiologia/métodos , Compostos Radiofarmacêuticos/administração & dosagem , Medição de Risco/métodos , Medição de Risco/normas
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